Package hultig.align

This package gathers the sequence alignment algorithms used in other classes, specially those in the hultig.sumo package.

See:
Description

Class Summary

NWunsch	This class contains an implementation of the Needleman Wunsch algorithm for globally align sequence pairs (the whole sequences).
SimpleChaining	NOT YET WELL COMMENTED.
SimpleChaining.Match	Match class defintion
SWaterman	This class contains an implementation of the Smith Waterman algorithm for locally align sequence pairs.

Package hultig.align Description

This package gathers the sequence alignment algorithms used in other classes, specially those in the hultig.sumo package. Two sequence alignment algorithms were adapted for word alignment between sentence pairs. One for global alignment - The Needleman Wunsch - and another for local alignment - The Smith Waterman.